SARS-CoV-2 Genome Variant Name

General Details:

Name:
SARS-CoV-2 Genome Variant Name
Steward:
Project 5 (COVID-19)
Definition:
Variants caused by gene mutations of SARS-CoV-2.
Registration Status:
Qualified

Permissible Values:

Data Type:
Value List
Unit of Measure:
Ids:
Value Code Name Code Code System Code Description
B.1.1.7 UK A variant lineage of SARS coronavirus 2 where the following variations in the spike glycoprotein sequence have been identified: deletions of the amino acids at positions 69, 70 and 144 and amino acid substitutions N501Y, A570D, D614G, P681H, T716I, S982A and D1118H. The substitutions E484K, S494P and K1191N have also been detected in some but not all sequences for this lineage. C179573
B.1.351 South Africa A variant lineage of SARS coronavirus 2 where the following variations in the spike glycoprotein sequence have been identified: deletions of the amino acids at positions 241-242 and amino acid substitutions D80A, D215G, K417N, E484K, N501Y, D614G and A701V. C179575
B.1.427 US California A variant lineage of SARS coronavirus 2 where the following variations in the spike glycoprotein sequence have been identified: amino acid substitutions L452R and D614G. C179576
B.1.429 US California A variant lineage of SARS coronavirus 2 where the following variations in the spike glycoprotein sequence have been identified: amino acid substitutions S13I, W152C, L452R and D614G. C179577
B.1.525 UK/Nigeria December 2020 A variant lineage of SARS coronavirus 2 where the following variations in the spike glycoprotein sequence have been identified: deletions of the amino acids at positions 69, 70 and 144 and amino acid substitutions A67V, E484K, D614G, Q677H and F888L. C179579
B.1.526 US New Your November 2020 A variant lineage of SARS coronavirus 2 where the following variations in the spike glycoprotein sequence have been identified: amino acid substitutions T95I, D253G and D614G. The substitutions L5F, S477N, E484K and A701V have also been detected in some but not all sequences for this lineage. C179580
B.1.526.1 US New York October 2020 A variant lineage of SARS coronavirus 2 where the following variations in the spike glycoprotein sequence have been identified: deletion of the amino acids at position 144 and amino acid substitutions D80G, F157S, L452R, D614G and D950H. The substitutions T791I and T859N have also been detected in some but not all sequences for this lineage. C179582
B.1.617 India February 2021 A variant lineage of SARS coronavirus 2 where the following variations in the spike glycoprotein sequence have been identified: amino acid substitutions L452R, E484Q and D614G. C179583
B.1.617.1 India December 2020 A variant lineage of SARS coronavirus 2 where the following variations in the spike glycoprotein sequence have been identified: amino acid substitutions G142D, E154K, L452R, E484Q, D614G, P681R and Q1071H. The substitution T95I has also been detected in some but not all sequences for this lineage. C179585
B.1.617.2 India December 2020 A variant lineage of SARS coronavirus 2 where the following variations in the spike glycoprotein sequence have been identified: deletions of the amino acids at positions 156 and 157 and amino acid substitutions T19R, R158G, L452R, T478K, D614G, P681R and D950N. The substitution G142D has also been detected in some but not all sequences for this lineage. C179586
B.1.617.3 India October 2020 A variant lineage of SARS coronavirus 2 where the following variations in the spike glycoprotein sequence have been identified: amino acid substitutions T19R, G142D, L452R, E484Q, D614G, P681R, D950N. C179596
P.2 Brazil April 2020 A variant lineage of SARS coronavirus 2 where the following variations in the spike glycoprotein sequence have been identified: amino acid substitutions E484K, D614G and V1176F. The substitution F565L has also been detected in some but not all sequences for this lineage. C179598
P.1 Japan/Brazil A variant lineage of SARS coronavirus 2 where the following variations in the spike glycoprotein sequence have been identified: amino acid substitutions L18F, T20N, P26S, D138Y, R190S, K417T, E484K, N501Y, D614G, H655Y, T1027I and V1176F. C179599
B.1.128 Brazil A variant lineage of SARS coronavirus 2 that is the ancestor for the P.1 and P.2 lineages. C179600
Other, Specify A directive to specify when the listed responses are not sufficient. C157101

Designations:

Designation:
SARS-CoV-2 Genome Variant Name
Tags:
Designation:
What genome variant was noted?
Tags:
Preferred Question Text

Designations:

Definition:
Variants caused by gene mutations of SARS-CoV-2.
Tags:

Properties:

Key:
Tags/Keywords
Value:
COVID Specific, Variant & Mutation Information, Genome Variant
Key:
Project 5 (COVID-19) Source
Value:
Project 5 WG2, https://www.thelancet.com/journals/lancet/article/PIIS0140-6736(21)00183-5/fulltext, NCI Genomics experts

Identifiers:

Source:
NLM
Id:
6le70QEwf
Version: