Organism

General Details:

Name:
Organism
Steward:
NHLBI
Definition:
Code indicating organism.
Registration Status:
Qualified

Permissible Values:

Data Type:
Value List
Unit of Measure:
Ids:
Value Code Name Code Code System Code Description
Staphylococcus (coag-) Staphylococcus (coag-)
Staphylococcus (coag +) Staphylococcus (coag +)
Staphylococcus (NOS) Staphylococcus (NOS)
Stomatococcus mucilaginosis Stomatococcus mucilaginosis
Streptococcus (all species except Enterococcus) Streptococcus (all species except Enterococcus)
Treponema (syphilis) Treponema (syphilis)
Tuberculosis (NOS, AFB, acid fast bacillus, Koch bacillus) Tuberculosis (NOS, AFB, acid fast bacillus, Koch bacillus)
Typical Tuberculosis (TB, Tuberculosis) Typical Tuberculosis (TB, Tuberculosis)
Vibrio (all species) Vibrio (all species)
Other Bacteria Other Bacteria
Herpes Simplex (HSV1, HSV2) Herpes Simplex (HSV1, HSV2)
Herpes Zoster (Chicken Pox, Varicella) Herpes Zoster (Chicken Pox, Varicella)
Cytomegalovirus (CMV) Cytomegalovirus (CMV)
Adenovirus Adenovirus
Enterovirus (Coxsackie, Echo, Polio) Enterovirus (Coxsackie, Echo, Polio)
Hepatitis A (HAV) Hepatitis A (HAV)
Hepatitis B (HBV, Australian antigen) Hepatitis B (HBV, Australian antigen)
Hepatitis C (includes non-A and non-B, HCV) Hepatitis C (includes non-A and non-B, HCV)
HIV-1, HITLV-III HIV-1, HITLV-III
Influenza (Flu) Influenza (Flu)
Measles (Rubeola) Measles (Rubeola)
Mumps Mumps
Papovavirus Papovavirus
Respiratory Syncytial virus (RSV) Respiratory Syncytial virus (RSV)
Rubella (German Measles) Rubella (German Measles)
Parainfluenza Parainfluenza
HHV-6 (Human Herpes Virus) HHV-6 (Human Herpes Virus)
Epstein-Barr Virus (EBV) Epstein-Barr Virus (EBV)
Polyomavirus Polyomavirus
Rotavirus Rotavirus
Rhinovirus (Common Cold) Rhinovirus (Common Cold)
Other Viral Other Viral
Pneumoncystis (PCP) Pneumoncystis (PCP)
Toxoplasma Toxoplasma
Giardia Giardia
Cryptosporidium Cryptosporidium
Amebiasis Amebiasis
Echinoco ocalcyst Echinoco ocalcyst
Trichomonas (either vaginal or gingivitis) Trichomonas (either vaginal or gingivitis)
Other Protozoal (parasite) Other Protozoal (parasite)
Mycobacterium Tuberculosis Mycobacterium Tuberculosis
Other Mycobacterium Other Mycobacterium
Mycoplasma Mycoplasma
Other Organism Other Organism
Candida Albicans Candida Albicans
Candida Krusei Candida Krusei
Candida Parasilosis Candida Parasilosis
Candida Tropicalis Candida Tropicalis
Torulopsis Galbrata (a subspecies of Candida) Torulopsis Galbrata (a subspecies of Candida)
Candida (NOS) Candida (NOS)
Asperguillus Flavus Asperguillus Flavus
Asperguillus Fumigatus Asperguillus Fumigatus
Asperguillus Niger Asperguillus Niger
Asperguillus (NOS) Asperguillus (NOS)
Cryptococcus Species Cryptococcus Species
Fusarium Species Fusarium Species
Mucormycosis (Zygomycetes, Rhizopus) Mucormycosis (Zygomycetes, Rhizopus)
Yeast (NOS) Yeast (NOS)
Other Fungus Other Fungus
Acinetobacter (baumanii, calcoaceticus, lwoffi, other species) Acinetobacter (baumanii, calcoaceticus, lwoffi, other species)
Agrobacterium radiobacter Agrobacterium radiobacter
Alcaligenes xylosoxidans Alcaligenes xylosoxidans
Anaerobic bacteria (NOS, except for Bacteroides, Clostridium) Anaerobic bacteria (NOS, except for Bacteroides, Clostridium)
Bacillus (cereus, other species) Bacillus (cereus, other species)
Bacteroides (gracillis, uniformis, vulgaris, other species) Bacteroides (gracillis, uniformis, vulgaris, other species)
Borrelia (Lyme Disease) Borrelia (Lyme Disease)
Branhamelia or Moraxella catarrhalis (other species) Branhamelia or Moraxella catarrhalis (other species)
Campylobacter (all species) Campylobacter (all species)
Chlamydia Chlamydia
Citrobacter (freundii, other species) Citrobacter (freundii, other species)
Clostridium (all species except difficile) Clostridium (all species except difficile)
Clostridium diificile Clostridium diificile
Corynebacterium (all non-diptheria species) Corynebacterium (all non-diptheria species)
Coxiella Coxiella
Enterobacter Enterobacter
Enterococcus (all species) Enterococcus (all species)
Escherichia (also E. coli) Escherichia (also E. coli)
Flavimonas oryzihabitans Flavimonas oryzihabitans
Flavobacterium Flavobacterium
Fusobacterium nucleatum Fusobacterium nucleatum
Gram Negative Diplococci (NOS) Gram Negative Diplococci (NOS)
Gram Negative Rod (NOS) Gram Negative Rod (NOS)
Gram Positive Cocci (NOS) Gram Positive Cocci (NOS)
Gram Positive Rod (NOS) Gram Positive Rod (NOS)
Haemophilus (all species including influenzae) Haemophilus (all species including influenzae)
Helicobacter pylori Helicobacter pylori
Klebsiella Klebsiella
Lactobacillus (bulgaricus, acidophilus, other species) Lactobacillus (bulgaricus, acidophilus, other species)
Legionella Legionella
Leptospira Leptospira
Leptotrichia buccalis Leptotrichia buccalis
Leuconostoc (all species) Leuconostoc (all species)
Listeria Listeria
Methylobacterium Methylobacterium
Micrococcus (NOS) Micrococcus (NOS)
Mycobacteria (avium, bovium, haemophilum, intercellulare) Mycobacteria (avium, bovium, haemophilum, intercellulare)
Mycoplasma Mycoplasma
Neisseria (gonorrhoea, meningitidis, other species) Neisseria (gonorrhoea, meningitidis, other species)
Nocardia Nocardia
Pharyngeal/Respiratory Flora Pharyngeal/Respiratory Flora
Propionbacterium (acnes, avidum, granulosum, other species) Propionbacterium (acnes, avidum, granulosum, other species)
Pseudomonas (all species except cepacia and maltophilia) Pseudomonas (all species except cepacia and maltophilia)
Pseudomonas or Burkholderia cepacia Pseudomonas or Burkholderia cepacia
Pseudomonas or Stenotrophomonas or Xanthomonas maltophilia Pseudomonas or Stenotrophomonas or Xanthomonas maltophilia
Rhodococcus Rhodococcus
Rickettsia Rickettsia
Salmonella (all species) Salmonella (all species)
Serratia marcescens Serratia marcescens
Shigella Shigella

Designations:

Designation:
Organism
Tags:
Designation:
Organism code
Tags:
Preferred Question Text

Designations:

Definition:
Code indicating organism.
Tags:
Short Description,Description

Reference Documents:

ID:
Title:
URI:
Provider Org:
Language Code:
en-us
Document:

Identifiers:

Source:
NLM
Id:
Jc5aVsPD9Y
Version:
Source:
BRICS Variable Name
Id:
OrgCode
Version:
Source:
NHLBI ID
Id:
C58928
Version: